7M1V
Structure of Zika virus NS2b-NS3 protease mutant binding the compound NSC86314 in the super-open conformation
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL14-1 |
Synchrotron site | SSRL |
Beamline | BL14-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-01-22 |
Detector | DECTRIS PILATUS 12M |
Wavelength(s) | 1.19499 |
Spacegroup name | P 1 |
Unit cell lengths | 40.810, 42.637, 46.296 |
Unit cell angles | 98.88, 92.11, 90.41 |
Refinement procedure
Resolution | 33.680 - 1.600 |
Rwork | 0.160 |
R-free | 0.18900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6um3 |
RMSD bond length | 0.015 |
RMSD bond angle | 1.841 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0257) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 33.680 | 1.630 |
High resolution limit [Å] | 1.600 | 1.600 |
Rmerge | 0.023 | 0.076 |
Rmeas | 0.029 | |
Number of reflections | 38226 | 1474 |
<I/σ(I)> | 25.1 | 8.2 |
Completeness [%] | 93.9 | 72.9 |
Redundancy | 2.6 | 2.2 |
CC(1/2) | 0.996 | 0.992 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.2 ul of 0.3 mM protein and 0.4 mM of the compound NSC83614 in 100 mM NaCl, 20 mM Tris-Cl buffer (pH 8.0), was mixed with 0.2 ul of the well solution. |