7LHZ
K. pneumoniae Topoisomerase IV (ParE-ParC) in complex with DNA and (3S)-10-[(3R)-3-(1-aminocyclopropyl)pyrrolidin-1-yl]-9-fluoro-3-methyl-5-oxo-2,3-dihydro-5H-[1,4]oxazino[2,3,4-ij]quinoline-6-carboxylic acid (compound 25)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-03-09 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 1.00000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 94.185, 159.818, 144.059 |
Unit cell angles | 90.00, 94.94, 90.00 |
Refinement procedure
Resolution | 46.920 - 3.300 |
R-factor | 0.2839 |
Rwork | 0.283 |
R-free | 0.30830 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5eix |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | PHASER |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 54.910 | 54.910 | 3.350 |
High resolution limit [Å] | 3.300 | 8.940 | 3.300 |
Rmerge | 0.247 | 0.064 | 1.768 |
Number of reflections | 63836 | 3283 | 3046 |
<I/σ(I)> | 3.3 | 11.5 | 0.5 |
Completeness [%] | 99.6 | 100 | 95.3 |
Redundancy | 3.3 | 3.5 | 3.2 |
CC(1/2) | 0.979 | 0.992 | 0.312 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.6 | 290 | 20% MPD, 10 mM magnesium chloride, 0.5 mM spermine, 100 mM sodium cacodylate, pH 6.6 |