7L5B
Crystallographic structure of neutralizing antibody 2-15 in complex with SARS-CoV-2 spike receptor-binding Domain (RBD).
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-10-14 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 0.97918 |
Spacegroup name | I 1 2 1 |
Unit cell lengths | 134.013, 70.439, 140.039 |
Unit cell angles | 90.00, 96.93, 90.00 |
Refinement procedure
Resolution | 102.490 - 3.180 |
R-factor | 0.1919 |
Rwork | 0.187 |
R-free | 0.23870 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7bz5 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.410 |
Data reduction software | XDS |
Data scaling software | Aimless (V.7.0) |
Phasing software | PHENIX ((1.18.2_3874: ???)) |
Refinement software | PHENIX ((1.18.2_3874: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 102.490 | 3.880 |
High resolution limit [Å] | 3.180 | 3.180 |
Rmerge | 0.111 | 0.110 |
Number of reflections | 27227 | 4388 |
<I/σ(I)> | 1.7 | |
Completeness [%] | 99.8 | |
Redundancy | 4.5 | |
CC(1/2) | 0.951 | 0.992 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 298 | 0.1 M Hepes, 70 % MPD |