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7KO3

Dihydrodipicolinate synthase (DHDPS) from C.jejuni, E88D mutant with pyruvate bound in the active site and L-lysine bound at the allosteric site

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsCLSI BEAMLINE 08ID-1
Synchrotron siteCLSI
Beamline08ID-1
Temperature [K]100
Detector technologyPIXEL
Collection date2019-07-25
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)0.9795
Spacegroup nameC 2 2 21
Unit cell lengths85.320, 232.260, 200.370
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution43.820 - 2.220
R-factor0.1592
Rwork0.157
R-free0.20590
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4ly8
Data reduction softwareHKL-3000
Data scaling softwareXSCALE
Phasing softwareMOLREP
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]43.8202.299
High resolution limit [Å]2.2202.220
Rmerge0.743
Number of reflections12884089721
<I/σ(I)>15.94
Completeness [%]100.099.98
Redundancy15
CC(1/2)0.998
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1MICROBATCH7.4288.150.3 M Magnesium acetate, 10 % PEG 8000, 0.1 M Sodium acetate (pH 7.4), 60 mM L-lysine

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PDB entries from 2024-11-06

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