7JOO
Crystal structure of ICOS in complex with antibody STIM003 and anti-kappa VHH domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-2 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-07-06 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.979341 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 171.855, 49.031, 91.817 |
Unit cell angles | 90.00, 101.90, 90.00 |
Refinement procedure
Resolution | 28.480 - 2.400 |
R-factor | 0.244 |
Rwork | 0.241 |
R-free | 0.29660 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1i8l internal database |
RMSD bond length | 0.002 |
RMSD bond angle | 0.608 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.000 | 2.480 |
High resolution limit [Å] | 2.380 | 2.380 |
Rmerge | 0.109 | 0.608 |
Rpim | 0.045 | 0.258 |
Number of reflections | 30150 | 3223 |
<I/σ(I)> | 13.3 | 2.1 |
Completeness [%] | 99.2 | 94 |
Redundancy | 6.6 | 6 |
CC(1/2) | 0.997 | 0.732 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293.15 | 0.2 M di-sodium hydrogen phosphate and 20% (w/v) polyethylene glycol 3350 |