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7DK1

Crystal structure of Zinc bound SARS-CoV-2 main protease

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsELETTRA BEAMLINE 11.2C
Synchrotron siteELETTRA
Beamline11.2C
Temperature [K]100
Detector technologyPIXEL
Collection date2020-11-16
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.999
Spacegroup nameP 21 21 21
Unit cell lengths67.620, 102.200, 102.350
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution72.320 - 1.902
R-factor0.1906
Rwork0.190
R-free0.20940
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6y2e
RMSD bond length0.009
RMSD bond angle0.980
Phasing softwarePHASER
Refinement softwareBUSTER (2.10.3 (19-MAR-2020))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]72.3201.935
High resolution limit [Å]1.9001.902
Rmerge0.087
Number of reflections5643135945
<I/σ(I)>2.69
Completeness [%]100.0100
Redundancy12.8
CC(1/2)0.9990.831
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.5293.15Bis-Tris (0.1 M), PEG 3350 (20%), DMSO (5%)

222624

PDB entries from 2024-07-17

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