7DHN
The co-crystal structure of DYRK2 with a small molecule inhibitor 20
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 293 |
Detector technology | PIXEL |
Collection date | 2018-10-07 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9795 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 64.760, 128.550, 132.640 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 57.836 - 2.380 |
R-factor | 0.1873 |
Rwork | 0.185 |
R-free | 0.22320 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3k2l |
Data reduction software | PDB_EXTRACT |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260: ???) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 66.320 | 2.440 |
High resolution limit [Å] | 2.380 | 2.380 |
Rmerge | 0.083 | 1.133 |
Rpim | 0.025 | 0.334 |
Number of reflections | 298430 | 22578 |
<I/σ(I)> | 18.9 | |
Completeness [%] | 99.8 | |
Redundancy | 13.2 | |
CC(1/2) | 0.999 | 0.789 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 0.36 M-0.5 M sodium citrate tribasic dehydrate, 0.01M sodium borate, pH 7.5-9.5 |