7DH9
The co-crystal structure of DYRK2 with a small molecule inhibitor 7
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 293 |
Detector technology | PIXEL |
Collection date | 2018-10-09 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 64.142, 128.440, 134.106 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.380 - 2.194 |
R-factor | 0.19 |
Rwork | 0.188 |
R-free | 0.21760 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3k2l |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260: ???) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.270 |
High resolution limit [Å] | 2.190 | 2.190 |
Rmerge | 0.127 | 1.001 |
Rpim | 0.037 | 0.296 |
Number of reflections | 28736 | 1431 |
<I/σ(I)> | 24.4 | 3 |
Completeness [%] | 100.0 | |
Redundancy | 12.7 | |
CC(1/2) | 0.998 | 0.821 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 0.36 M-0.5 M sodium citrate tribasic dehydrate, 0.01 M sodium borate, pH 7.5-9.5 |