Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7B7J

EccD5 ubiqutin like domain from Mycobacterium xenopi

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)
Synchrotron sitePETRA III, EMBL c/o DESY
BeamlineP13 (MX1)
Temperature [K]100
Detector technologyPIXEL
Collection date2017-12-21
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)0.97
Spacegroup nameP 43 21 2
Unit cell lengths43.979, 43.979, 85.146
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution30.610 - 1.660
R-factor0.183
Rwork0.181
R-free0.21630
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4kv2
RMSD bond length0.032
RMSD bond angle3.305
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0258)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]42.5701.690
High resolution limit [Å]1.6601.660
Rmerge0.0491.522
Number of reflections10396510
<I/σ(I)>13.7
Completeness [%]99.299.4
Redundancy6.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2920.06 M MgCl2, CaCl2, 0.1 M Tris:bicine pH 8.5, 10 % OEG 20k, 20 % PEG MME 550

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon