7B7J
EccD5 ubiqutin like domain from Mycobacterium xenopi
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-12-21 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.97 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 43.979, 43.979, 85.146 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.610 - 1.660 |
R-factor | 0.183 |
Rwork | 0.181 |
R-free | 0.21630 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4kv2 |
RMSD bond length | 0.032 |
RMSD bond angle | 3.305 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.570 | 1.690 |
High resolution limit [Å] | 1.660 | 1.660 |
Rmerge | 0.049 | 1.522 |
Number of reflections | 10396 | 510 |
<I/σ(I)> | 13.7 | |
Completeness [%] | 99.2 | 99.4 |
Redundancy | 6.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 292 | 0.06 M MgCl2, CaCl2, 0.1 M Tris:bicine pH 8.5, 10 % OEG 20k, 20 % PEG MME 550 |