7B4E
Structural basis of reactivation of oncogenic p53 mutants by a small molecule: methylene quinuclidinone (MQ). Human p53DBD-R282W mutant bound to DNA and MQ: R282W-DNA-MQ
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-3 |
Synchrotron site | ESRF |
Beamline | MASSIF-3 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-08-07 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 0.96770 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 136.505, 49.553, 33.401 |
Unit cell angles | 90.00, 93.44, 90.00 |
Refinement procedure
Resolution | 34.060 - 1.580 |
R-factor | 0.1684 |
Rwork | 0.166 |
R-free | 0.20130 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2ac0 |
RMSD bond length | 0.006 |
RMSD bond angle | 1.050 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.18.2-3874) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.610 |
High resolution limit [Å] | 1.570 | 4.290 | 1.580 |
Rmerge | 0.111 | 0.059 | 0.610 |
Rmeas | 0.116 | 0.062 | 0.685 |
Rpim | 0.034 | 0.018 | 0.304 |
Number of reflections | 30188 | 1605 | 1443 |
<I/σ(I)> | 6.3 | ||
Completeness [%] | 97.5 | 99.8 | 93.5 |
Redundancy | 10.1 | 11.9 | 4.4 |
CC(1/2) | 0.998 | 0.716 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 6.1 | 292 | Protein/DNA ratio 1:1.5, 0.1M Sodium Acetate, 20% w/v PEG 3350 |