7B4D
Structural basis of reactivation of oncogenic p53 mutants by a small molecule: methylene quinuclidinone (MQ). Human p53DBD-R273C/S240R double mutant bound to DNA and MQ: R273C/S240R-DNA-MQ
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2015-10-10 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.54178 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 137.587, 50.164, 34.231 |
Unit cell angles | 90.00, 92.60, 90.00 |
Refinement procedure
Resolution | 18.280 - 1.850 |
R-factor | 0.1721 |
Rwork | 0.168 |
R-free | 0.20430 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2ac0 |
RMSD bond length | 0.006 |
RMSD bond angle | 1.239 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.18.2-3874) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 25.000 | 25.000 | 1.880 |
High resolution limit [Å] | 1.850 | 5.010 | 1.850 |
Rmerge | 0.057 | 0.033 | 0.508 |
Rmeas | 0.061 | 0.035 | 0.552 |
Rpim | 0.019 | 0.011 | 0.210 |
Total number of observations | 181291 | ||
Number of reflections | 19150 | 1026 | 885 |
<I/σ(I)> | 12.9 | ||
Completeness [%] | 95.6 | 97.9 | 88.1 |
Redundancy | 9.5 | 9.4 | 6.2 |
CC(1/2) | 0.999 | 0.909 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 6.1 | 292 | Protein/DNA ratio 1:2.4, 0.2M Sodium formate, 20% w/v PEG 3350 |