7AXX
Structure of WDR5:CS-VIP8 crystal after illumination at 405 nm and room temperature
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-08-19 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.00 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 46.030, 46.900, 126.320 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 44.010 - 1.790 |
R-factor | 0.16817 |
Rwork | 0.166 |
R-free | 0.21361 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6iam |
RMSD bond length | 0.012 |
RMSD bond angle | 1.530 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.010 | 1.859 |
High resolution limit [Å] | 1.790 | 1.790 |
Rmerge | 0.085 | 0.619 |
Rmeas | 0.093 | 0.750 |
Rpim | 0.037 | 0.411 |
Number of reflections | 25827 | 6956 |
<I/σ(I)> | 11.32 | 1.44 |
Completeness [%] | 96.1 | 66.56 |
Redundancy | 5.9 | 3.1 |
CC(1/2) | 0.998 | 0.615 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 277.15 | 10% (w/v) PEG20000, 20% (v/v) PEG550 MME, 0.02 M sodium formate, 0.02 M ammonium acetate, 0.02 M trisodium citrate, 0.02 M sodium potassium L-tartrate, 0.02 M sodium oxamate |