7AQF
Crystal Structure of Small Molecule Inhibitor TM5484 Bound to Stabilized Active Plasminogen Activator Inhibitor-1 (PAI-1-stab)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 1 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-11-18 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.978560 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 135.296, 64.322, 106.644 |
Unit cell angles | 90.00, 116.96, 90.00 |
Refinement procedure
Resolution | 33.440 - 1.770 |
R-factor | 0.1801 |
Rwork | 0.178 |
R-free | 0.21350 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6gwp |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 66.300 | 66.300 | 1.820 |
High resolution limit [Å] | 1.730 | 5.460 | 1.730 |
Rmerge | 0.091 | 0.039 | 1.208 |
Rmeas | 0.099 | 0.043 | 1.305 |
Rpim | 0.038 | 0.017 | 0.489 |
Total number of observations | 576610 | 17279 | 85847 |
Number of reflections | 85314 | 2813 | 12345 |
<I/σ(I)> | 8.5 | 19.5 | 1.7 |
Completeness [%] | 99.5 | 99.4 | 98.9 |
Redundancy | 6.8 | 6.1 | 7 |
CC(1/2) | 0.999 | 0.999 | 0.750 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.3 | 293 | 0.2 M TRISODIUM CITRATE, 10% w/v PEG 3350 |