7AE9
Crystal structure of mono-AMPylated HEPN(R46E) toxin in complex with MNT antitoxin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-07-02 |
Detector | PSI PILATUS 6M |
Wavelength(s) | 0.9797 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 101.250, 204.543, 73.258 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 102.271 - 2.900 |
R-factor | 0.2075 |
Rwork | 0.203 |
R-free | 0.24570 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7ae2 |
RMSD bond length | 0.005 |
RMSD bond angle | 0.749 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHASER (2.8.0) |
Refinement software | PHENIX (1.12-2829) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 204.543 | 204.543 | 3.060 |
High resolution limit [Å] | 2.900 | 9.170 | 2.900 |
Rmerge | 0.031 | 0.714 | |
Rmeas | 0.100 | 0.035 | 0.813 |
Rpim | 0.037 | 0.014 | 0.294 |
Total number of observations | 7904 | 37704 | |
Number of reflections | 34618 | 1239 | 4980 |
<I/σ(I)> | 12.8 | 36.9 | 3 |
Completeness [%] | 100.0 | 100 | 100 |
Redundancy | 7.4 | 6.4 | 7.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 291 | Crystallization buffer was 0,1M MOPS-HEPES pH 7.5, 9% PEG4K, 18% glycerol, 30 mM ethylene glycol |