7AAK
Human porphobilinogen deaminase R173W mutant crystallized in the ES2 intermediate state
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-11-18 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9762 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 81.241, 86.127, 107.390 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 59.100 - 1.700 |
R-factor | 0.1841 |
Rwork | 0.183 |
R-free | 0.21280 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | D_1292107576 |
RMSD bond length | 0.007 |
RMSD bond angle | 0.881 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER (1.17.1_3660) |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 59.100 | 1.761 |
High resolution limit [Å] | 1.700 | 1.700 |
Rmerge | 0.068 | 1.560 |
Rmeas | 0.074 | 1.690 |
Number of reflections | 83105 | 8199 |
<I/σ(I)> | 15.48 | 1.62 |
Completeness [%] | 99.5 | |
Redundancy | 6.6 | 6.8 |
CC(1/2) | 1.000 | 0.730 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.1 | 293 | polyethylene glycol 3350, ammonium citrate |