7A78
Crystal structure of RXR beta LBD in complexes with palmitic acid and GRIP-1 peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-02-01 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 63.634, 63.634, 110.142 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.000 - 1.720 |
R-factor | 0.1779 |
Rwork | 0.176 |
R-free | 0.20370 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6sjm |
RMSD bond length | 0.013 |
RMSD bond angle | 1.356 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 45.000 | 45.000 | 1.780 |
High resolution limit [Å] | 1.720 | 6.660 | 1.720 |
Rmerge | 0.059 | 0.038 | 0.875 |
Rmeas | 0.066 | 0.041 | 0.990 |
Rpim | 0.023 | 0.015 | 0.341 |
Number of reflections | 24821 | 527 | 2373 |
<I/σ(I)> | 15.3 | 2.3 | |
Completeness [%] | 100.0 | 99.8 | 100 |
Redundancy | 8 | 7.1 | 8.3 |
CC(1/2) | 0.999 | 0.999 | 0.769 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293.15 | 16% low molecular weight PEG smears, 0.1M HEPES, pH 7.5, 5% ethylene glycol, 0.1M KCl |