7A77
Crystal structure of RXR alpha LBD in complexes with palmitic acid and GRIP-1 peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-11-27 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.03320 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 66.189, 66.189, 110.599 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.100 - 1.500 |
R-factor | 0.1535 |
Rwork | 0.152 |
R-free | 0.17990 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6sjm |
RMSD bond length | 0.015 |
RMSD bond angle | 1.580 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.3) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 43.100 | 43.100 | 1.550 |
High resolution limit [Å] | 1.500 | 5.810 | 1.500 |
Rmerge | 0.073 | 0.053 | 0.703 |
Rmeas | 0.078 | 0.055 | 0.759 |
Rpim | 0.019 | 0.014 | 0.199 |
Number of reflections | 40177 | 821 | 3855 |
<I/σ(I)> | 20 | 4 | |
Completeness [%] | 100.0 | 99.8 | 100 |
Redundancy | 15.6 | 13.9 | 14.2 |
CC(1/2) | 0.999 | 0.998 | 0.876 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293.15 | 17% PEG 3350, 0.2M ammonium actetate, 0.1M tris, pH 8.0 |