7VYT
Crystal structure of human TIGIT(23-129) in complex with the scFv fragment of anti-TIGIT antibody MG1131
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 5C (4A) |
Synchrotron site | PAL/PLS |
Beamline | 5C (4A) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-03-06 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.97957 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 69.670, 79.820, 77.970 |
Unit cell angles | 90.00, 100.55, 90.00 |
Refinement procedure
Resolution | 29.330 - 1.530 |
R-factor | 0.2021 |
Rwork | 0.201 |
R-free | 0.21900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6ehv 3ucr |
RMSD bond length | 0.012 |
RMSD bond angle | 1.196 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.330 | 1.585 |
High resolution limit [Å] | 1.530 | 1.530 |
Rmerge | 0.065 | |
Number of reflections | 126325 | 12553 |
<I/σ(I)> | 16 | |
Completeness [%] | 99.9 | |
Redundancy | 7 | |
CC(1/2) | 0.999 | 0.703 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293.15 | 200mM ammonium citrate, 20% (v/v) polyethylene glycol 3350 |