7VDQ
The structure of cyclin-dependent kinase 5 (CDK5) in complex with p25 and Compound 7
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | APS BEAMLINE 21-ID-D |
| Synchrotron site | APS |
| Beamline | 21-ID-D |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2019-03-21 |
| Detector | DECTRIS EIGER X 9M |
| Wavelength(s) | 1.12709 |
| Spacegroup name | P 32 2 1 |
| Unit cell lengths | 117.610, 117.610, 154.010 |
| Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
| Resolution | 38.500 - 2.910 |
| R-factor | 0.2539 |
| Rwork | 0.252 |
| R-free | 0.28390 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 3o0g |
| RMSD bond length | 0.005 |
| RMSD bond angle | 1.354 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.5.32) |
| Phasing software | PHASER |
| Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 38.670 | 38.670 | 2.990 |
| High resolution limit [Å] | 2.910 | 13.010 | 2.910 |
| Rmerge | 0.169 | 0.064 | 1.786 |
| Rmeas | 0.173 | 0.066 | 1.830 |
| Rpim | 0.039 | 0.016 | 0.394 |
| Total number of observations | 548565 | 4974 | 42125 |
| Number of reflections | 27572 | 340 | 1995 |
| <I/σ(I)> | 15.5 | 37.8 | 2.1 |
| Completeness [%] | 99.9 | 95.7 | 100 |
| Redundancy | 19.9 | 14.6 | 21.1 |
| CC(1/2) | 0.998 | 0.997 | 0.690 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 291 | 0.1M MES pH 5.5, 0.3M MgCl2, 20% PEG3350 |
