7TN0
SARS-CoV-2 Omicron RBD in complex with human ACE2 and S304 Fab and S309 Fab
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 4.2.2 |
Synchrotron site | ALS |
Beamline | 4.2.2 |
Temperature [K] | 100 |
Detector technology | CMOS |
Collection date | 2021-12-23 |
Detector | RDI CMOS_8M |
Wavelength(s) | 1.07216 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 78.280, 183.650, 194.550 |
Unit cell angles | 90.00, 95.98, 90.00 |
Refinement procedure
Resolution | 48.910 - 2.850 |
R-factor | 0.2322 |
Rwork | 0.230 |
R-free | 0.26790 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7jx3 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.658 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.20_4459) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.910 | 2.900 |
High resolution limit [Å] | 2.850 | 2.850 |
Number of reflections | 121127 | 6212 |
<I/σ(I)> | 5.6 | |
Completeness [%] | 96.7 | |
Redundancy | 5.8 | |
CC(1/2) | 0.975 | 0.209 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293.15 | 20% v/v Ethylene glycol, 10% w/v PEG 8000, 0.1 M Tris (base)/BICINE pH 8.5, 0.1 M NDSB-256 |