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7TA6

Trimer-to-Monomer Disruption of Tumor Necrosis Factor-alpha (TNF-alpha) by unnatural alpha/beta-peptide-1

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 23-ID-D
Synchrotron siteAPS
Beamline23-ID-D
Temperature [K]100
Detector technologyPIXEL
Collection date2019-12-12
DetectorDECTRIS PILATUS 6M
Wavelength(s)1.03323
Spacegroup nameC 1 2 1
Unit cell lengths143.774, 143.552, 76.888
Unit cell angles90.00, 97.85, 90.00
Refinement procedure
Resolution39.740 - 2.670
R-factor0.2463
Rwork0.245
R-free0.27270
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1TNF_A
Data reduction softwareXDS (Jan 31, 2020)
Data scaling softwareAimless (0.7.4)
Phasing softwarePHASER
Refinement softwarePHENIX (1.19.2)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]101.110101.1102.820
High resolution limit [Å]2.6708.4502.670
Rmerge0.1170.0521.789
Rmeas0.1270.0571.931
Rpim0.0480.0220.724
Total number of observations298842894344479
Number of reflections4373514116348
<I/σ(I)>9.525.81.1
Completeness [%]100.099.7100
Redundancy6.86.37
CC(1/2)0.9980.9980.428
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION8.52920.8 M potassium sodium tartrate, 0.1 M Tris HCl pH 8.5, 4% ethylene glycol

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PDB entries from 2024-05-15

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