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7T0R

Crystal structure of the anti-CD4 adnectin 6940_B01 as a complex with the extracellular domains of CD4 and ibalizumab fAb

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 22-ID
Synchrotron siteAPS
Beamline22-ID
Temperature [K]270
Detector technologyPIXEL
Collection date2019-03-29
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.987
Spacegroup nameP 2 21 21
Unit cell lengths83.510, 164.014, 167.053
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution29.530 - 3.650
R-factor0.2304
Rwork0.226
R-free0.29230
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3o2d
RMSD bond length0.004
RMSD bond angle0.834
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwareMOLREP (11.6.04)
Refinement softwarePHENIX (1.19.2_4158)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]100.000100.0003.560
High resolution limit [Å]3.5009.5003.500
Rmerge0.1960.0370.792
Rmeas0.2200.0420.893
Rpim0.0980.0190.402
Number of reflections2733415181148
<I/σ(I)>4.6
Completeness [%]92.292.579.8
Redundancy4.74.54.2
CC(1/2)0.9800.9930.667
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2950.01 M Na3 Citrate, 15.5% PEG3350, 0.3 M (NH4)2H Citrate, 0.1 M AmSO4

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PDB entries from 2024-05-15

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