7S87
Crystal Structure of Dihydroorotate dehydrogenase from Plasmodium falciparum in complex with Orotate, FMN, and inhibitor NCGC00600348-01
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | APS BEAMLINE 21-ID-E |
| Synchrotron site | APS |
| Beamline | 21-ID-E |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2021-07-02 |
| Detector | DECTRIS EIGER X 16M |
| Wavelength(s) | 0.979 |
| Spacegroup name | C 2 2 2 |
| Unit cell lengths | 124.726, 161.093, 92.569 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 67.500 - 2.750 |
| R-factor | 0.1728 |
| Rwork | 0.170 |
| R-free | 0.23000 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 6vty |
| RMSD bond length | 0.005 |
| RMSD bond angle | 0.953 |
| Data reduction software | XDS |
| Data scaling software | Aimless |
| Phasing software | PHASER |
| Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 98.600 | 2.880 |
| High resolution limit [Å] | 2.750 | 2.750 |
| Rmerge | 0.132 | 0.653 |
| Rmeas | 0.143 | 0.710 |
| Rpim | 0.054 | |
| Number of reflections | 24145 | 3084 |
| <I/σ(I)> | 12.2 | 3.6 |
| Completeness [%] | 98.4 | |
| Redundancy | 6.8 | 6.6 |
| CC(1/2) | 0.995 | 0.847 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 4.7 | 293 | 0.16 M Ammonium Sulfate, 0.1 M Sodium Acetate, 18% PEG4000, 10 mM DTT. Protein was co-crystallized with 2 mM DHOD, 5 mM NCGC00600348-01. cryo: 25% Glycerol |






