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7S3V

Structure of HsKYNase_66, an evolved variant of human kynureninase with greatly increased activity towards kynurenine

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 23-ID-D
Synchrotron siteAPS
Beamline23-ID-D
Temperature [K]93
Detector technologyPIXEL
Collection date2017-11-15
DetectorDECTRIS PILATUS 6M
Wavelength(s)1.03322
Spacegroup nameI 41 2 2
Unit cell lengths140.890, 140.890, 286.371
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution46.344 - 3.249
R-factor0.1896
Rwork0.185
R-free0.22780
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2hzp
RMSD bond length0.004
RMSD bond angle0.732
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwarePHENIX (1.11.1_2575)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0003.310
High resolution limit [Å]3.2498.8103.250
Rmerge0.1640.0560.791
Rmeas0.1910.0650.921
Rpim0.0950.0320.460
Number of reflections2147410791064
<I/σ(I)>4.3
Completeness [%]92.784.294.7
Redundancy3.63.53.6
CC(1/2)0.9920.574
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2778% PEG8000, 100 mM imidazole, 50 mM MgCl2, 0.2 mM PLP, 5% sucrose (diffracting crystal proteins were briefly supplemented with 0.005 mg/mL trypsin prior to sitting drop vapor diffusion in order to remove flexible terminal ends).

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PDB entries from 2024-05-15

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