7P47
Structure of the E3 ligase Smc5/Nse2 in complex with Ubc9-SUMO thioester mimetic
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALBA BEAMLINE XALOC |
Synchrotron site | ALBA |
Beamline | XALOC |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-05-27 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 71.144, 103.240, 115.616 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.135 - 3.314 |
R-factor | 0.2386 |
Rwork | 0.236 |
R-free | 0.29320 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3htk |
RMSD bond length | 0.009 |
RMSD bond angle | 1.517 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX (1.8.4_1496) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.140 | 3.580 |
High resolution limit [Å] | 3.310 | 3.310 |
Number of reflections | 13097 | 2585 |
<I/σ(I)> | 9.7 | |
Completeness [%] | 99.2 | |
Redundancy | 5.4 | |
CC(1/2) | 0.990 | 0.680 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 311 | 12% PEG8000, 0.2M dimethyl-2-hydroxyethylammoniumpropane sulfonate (NDSB 211), 8% ethylene glycol, 0.1M MES pH 6.5 |