Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7P47

Structure of the E3 ligase Smc5/Nse2 in complex with Ubc9-SUMO thioester mimetic

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALBA BEAMLINE XALOC
Synchrotron siteALBA
BeamlineXALOC
Temperature [K]100
Detector technologyPIXEL
Collection date2021-05-27
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.9792
Spacegroup nameP 21 21 21
Unit cell lengths71.144, 103.240, 115.616
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution47.135 - 3.314
R-factor0.2386
Rwork0.236
R-free0.29320
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3htk
RMSD bond length0.009
RMSD bond angle1.517
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHENIX
Refinement softwarePHENIX (1.8.4_1496)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]47.1403.580
High resolution limit [Å]3.3103.310
Number of reflections130972585
<I/σ(I)>9.7
Completeness [%]99.2
Redundancy5.4
CC(1/2)0.9900.680
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP31112% PEG8000, 0.2M dimethyl-2-hydroxyethylammoniumpropane sulfonate (NDSB 211), 8% ethylene glycol, 0.1M MES pH 6.5

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon