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7OVG

The C146A variant of an amidase from Pyrococcus horikoshii with bound acetamide

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I03
Synchrotron siteDiamond
BeamlineI03
Temperature [K]170
Detector technologyPIXEL
Collection date2019-09-20
DetectorDECTRIS EIGER2 XE 16M
Wavelength(s)0.9763
Spacegroup nameP 1
Unit cell lengths44.979, 57.012, 61.358
Unit cell angles68.09, 85.16, 76.93
Refinement procedure
Resolution43.850 - 1.650
R-factor0.1527
Rwork0.151
R-free0.18204
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6ypa
RMSD bond length0.014
RMSD bond angle1.626
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHENIX
Refinement softwareREFMAC (5.8.0267)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]43.8601.709
High resolution limit [Å]1.6501.650
Rmerge0.0560.367
Rmeas0.0650.444
Rpim0.0350.246
Number of reflections538522008
<I/σ(I)>11.322.39
Completeness [%]81.130.28
Redundancy3.43
CC(1/2)0.9960.927
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP293The crystallization condition is: 5mg/mL protein, 0.1M potassium chloride, 0.2M Sodium formate; 0.2M Ammonium acetate; 0.2M Sodium citrate tribasic dihydrate; 0.2M Sodium potassium tartrate tetrahydrate; 0.1M acetamide; Imidazole; MES monohydrate (acid); 25% v/v MPD; 25% PEG 1000; 25% w/v PEG 3350

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PDB entries from 2024-05-15

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