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7O58

Human phosphomannomutase 2 (PMM2) with mutation T237M in complex with the activator glucose 1,6-bisphosphate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALBA BEAMLINE XALOC
Synchrotron siteALBA
BeamlineXALOC
Temperature [K]100
Detector technologyPIXEL
Collection date2020-07-09
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.97926
Spacegroup nameP 65 2 2
Unit cell lengths70.520, 70.520, 359.720
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution59.950 - 1.970
R-factor0.1851
Rwork0.183
R-free0.22990
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7o0c
RMSD bond length0.014
RMSD bond angle1.215
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.19.2_4158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]59.9502.010
High resolution limit [Å]1.9651.965
Rmerge0.1742.220
Rpim0.0420.524
Number of reflections379852683
<I/σ(I)>14.71.8
Completeness [%]96.4100
Redundancy18.319.2
CC(1/2)0.9990.751
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.5293Drops made by mixing 1 microliter of protein solution and 1 microliter of crystallization deposit solution. Protein solution contained 5 mg/ml protein and 3 mM glucose 1,6-bisphophate in 20 mM Hepes pH 7.5 and 0.2 M NaCl. Crystallization solution contained 0.3-0.4 M MgCl2, 24% PEG3350 and 0.1 M HEPES pH 7.5

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PDB entries from 2024-05-15

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