7NLD
Structure of human Programmed cell death 1 ligand 1 (PD-L1) with low molecular mass inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-03-10 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9184 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 67.087, 75.255, 74.354 |
Unit cell angles | 90.00, 96.29, 90.00 |
Refinement procedure
Resolution | 43.030 - 2.300 |
R-factor | 0.2443 |
Rwork | 0.243 |
R-free | 0.29390 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5o45 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | PHENIX (1.15.2_3472) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.010 | 2.420 |
High resolution limit [Å] | 2.300 | 2.300 |
Number of reflections | 32474 | 1720 |
<I/σ(I)> | 15 | 1 |
Completeness [%] | 99.0 | 98.7 |
Redundancy | 13.4 | |
CC(1/2) | 1.000 | 0.770 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 293 | 0.1M sodium cocdylate pH 6.5; 25% PEG4000 |