Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7M5U

Crystal structure of human MPP8 chromodomain in complex with peptidomimetic ligand UNC5246

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 22-ID
Synchrotron siteAPS
Beamline22-ID
Temperature [K]100
Detector technologyPIXEL
Collection date2018-10-23
DetectorDECTRIS EIGER X 16M
Wavelength(s)1.
Spacegroup nameP 63 2 2
Unit cell lengths87.123, 87.123, 57.802
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution34.788 - 2.020
R-factor0.2164
Rwork0.216
R-free0.22830
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3lwe
RMSD bond length0.008
RMSD bond angle0.995
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwareREFMAC (5)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]75.4502.070
High resolution limit [Å]2.0202.020
Rmerge0.0441.661
Rpim0.0170.628
Number of reflections8912637
<I/σ(I)>28.781.7
Completeness [%]99.8100
Redundancy13.814.5
CC(1/2)1.0000.656
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1MICROBATCH5.6293100 mM sodium citrate tribasic dihydrate pH 5.6, 100 mM potassium sodium tartrate tetrahydrate, 2.0 M AmSO4

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon