7LEJ
Crystal structure of the second bromodomain (BD2) of human BRDT bound to Volasertib
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-BM |
Synchrotron site | APS |
Beamline | 22-BM |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-04-21 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1.000 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 72.910, 72.910, 50.310 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 36.455 - 1.730 |
R-factor | 0.1919 |
Rwork | 0.191 |
R-free | 0.21050 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5vbq |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.15.2_3472) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 36.455 | 36.455 | 1.770 |
High resolution limit [Å] | 1.730 | 7.740 | 1.730 |
Rmerge | 0.046 | 0.041 | 0.467 |
Rmeas | 0.048 | 0.044 | 0.489 |
Total number of observations | 178097 | ||
Number of reflections | 16418 | 217 | 1204 |
<I/σ(I)> | 29.71 | 53.9 | 6.54 |
Completeness [%] | 99.8 | 99.1 | 99.6 |
Redundancy | 10.848 | 9.115 | 11.149 |
CC(1/2) | 0.999 | 0.998 | 0.966 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.2 M Magnesium acetate tetrahydrate, 0.1 M sodium cacodylate trihydrate (pH 6.5), 20 % w/v PEG 8,000 |