7L1T
Crystal structure of human holo SepSecS
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-D |
Synchrotron site | APS |
Beamline | 21-ID-D |
Temperature [K] | 80 |
Detector technology | CCD |
Collection date | 2015-06-26 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1.0333 |
Spacegroup name | P 6 2 2 |
Unit cell lengths | 154.216, 154.216, 76.257 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 30.640 - 2.250 |
R-factor | 0.1948 |
Rwork | 0.192 |
R-free | 0.22950 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3hl2 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER (2.5.6) |
Refinement software | PHENIX (dev_3951) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.290 |
High resolution limit [Å] | 2.250 | 6.100 | 2.250 |
Rmerge | 0.093 | 0.054 | |
Rmeas | 0.099 | 0.058 | |
Rpim | 0.044 | 0.021 | |
Total number of observations | 218393 | ||
Number of reflections | 25765 | 1426 | 1257 |
<I/σ(I)> | 4.5 | ||
Completeness [%] | 99.9 | 98.3 | 100 |
Redundancy | 8.5 | 7.5 | 8.9 |
CC(1/2) | 0.998 | 0.169 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.3 | 285 | 0.36 M lithium citrate, 15% PEG 3,350, 0.1 M sodium cacodylic acid, 0.04 M HCl 4 mg/mL SepSecS, 1 mg/mL human tRNASec |