7D7S
HIV-1 SF2 Nef in complex with the Fyn SH3 R96I mutant
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 2 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-02-11 |
Detector | DECTRIS EIGER2 X 9M |
Wavelength(s) | 0.98011 |
Spacegroup name | P 64 2 2 |
Unit cell lengths | 122.110, 122.110, 145.890 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 48.680 - 3.320 |
R-factor | 0.28763 |
Rwork | 0.286 |
R-free | 0.29953 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4d8d |
RMSD bond length | 0.008 |
RMSD bond angle | 1.203 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.680 | 3.460 |
High resolution limit [Å] | 3.320 | 3.324 |
Rmerge | 0.218 | 9.136 |
Rmeas | 0.219 | 9.163 |
Rpim | 0.018 | 0.710 |
Number of reflections | 9209 | 461 |
<I/σ(I)> | 33.6 | 1.1 |
Completeness [%] | 94.6 | 42.1 |
Redundancy | 155.4 | 165.4 |
CC(1/2) | 1.000 | 0.486 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.5 | 293 | 0.10 M calcium acetate hydrate, 0.10 M sodium acetate buffer (pH 4.5), 10% w/v PEG 4000 |