7BQU
Cereblon in complex with SALL4 and (S)-thalidomide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE AR-NE3A |
Synchrotron site | Photon Factory |
Beamline | AR-NE3A |
Temperature [K] | 95 |
Detector technology | PIXEL |
Collection date | 2019-05-26 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1.000 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 70.962, 92.718, 43.986 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 34.674 - 1.900 |
R-factor | 0.1929 |
Rwork | 0.191 |
R-free | 0.23580 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4tz4 5yj0 |
RMSD bond length | 0.011 |
RMSD bond angle | 1.375 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER (Ver 1.15.1_3469) |
Refinement software | PHENIX (Ver 1.15.1_3469) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.990 | 1.940 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmeas | 0.158 | 1.310 |
Rpim | 0.044 | 0.363 |
Number of reflections | 11808 | 746 |
<I/σ(I)> | 12 | 2.5 |
Completeness [%] | 100.0 | 100 |
Redundancy | 12.9 | 12.8 |
CC(1/2) | 0.997 | 0.826 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 27% PEG 4000, 0.1 M sodium acetate (pH 5.5), 0.1 M magnesium chloride |