7AYY
Structure of the human 8-oxoguanine DNA Glycosylase hOGG1 in complex with activator TH10785
This is a non-PDB format compatible entry.
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2019-04-05 |
| Detector | DECTRIS PILATUS 6M-F |
| Wavelength(s) | 0.9159 |
| Spacegroup name | P 41 21 2 |
| Unit cell lengths | 86.025, 86.025, 427.602 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 84.478 - 2.000 |
| Rwork | 0.207 |
| R-free | 0.25030 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 6rlw |
| RMSD bond length | 0.006 |
| RMSD bond angle | 1.413 |
| Data reduction software | DIALS |
| Data scaling software | Aimless |
| Phasing software | PHASER |
| Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 86.030 | 2.030 |
| High resolution limit [Å] | 2.000 | 2.000 |
| Rmerge | 0.299 | 2.650 |
| Rmeas | 0.311 | 2.790 |
| Rpim | 0.087 | 0.886 |
| Number of reflections | 110134 | 5306 |
| <I/σ(I)> | 8.1 | 1.2 |
| Completeness [%] | 100.0 | 100 |
| Redundancy | 24.1 | 19 |
| CC(1/2) | 0.998 | 0.529 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293.15 | 0.12 M Alcohols, 0.1 M Buffer System 2 pH 7.5 and 48 % v/v Precipitant Mix 4 (Morpheus screen, Molecular Dimensions) |
