7AAJ
Human porphobilinogen deaminase in complex with cofactor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-06-06 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.976 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 81.163, 84.608, 108.913 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 65.080 - 1.800 |
R-factor | 0.2512 |
Rwork | 0.249 |
R-free | 0.29440 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3ecr |
RMSD bond length | 0.007 |
RMSD bond angle | 0.826 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 65.080 | 1.864 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmerge | 0.095 | 3.763 |
Rmeas | 0.102 | 4.028 |
Number of reflections | 69757 | 6877 |
<I/σ(I)> | 10.24 | 0.52 |
Completeness [%] | 98.9 | |
Redundancy | 7.6 | 7.7 |
CC(1/2) | 0.990 | 0.540 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.1 | 293 | 25% polyethylene glycol 3350, 200 mM ammonium citrate |