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6ZCZ

Crystal structure of receptor binding domain of SARS-CoV-2 Spike glycoprotein in ternary complex with EY6A Fab and a nanobody.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I03
Synchrotron siteDiamond
BeamlineI03
Temperature [K]100
Detector technologyPIXEL
Collection date2020-05-01
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.97625
Spacegroup nameH 3
Unit cell lengths177.867, 177.867, 87.715
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution35.260 - 2.650
R-factor0.2167
Rwork0.215
R-free0.25950
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6yla
RMSD bond length0.002
RMSD bond angle0.435
Data reduction softwarexia2
Data scaling softwarexia2
Phasing softwarePHASER
Refinement softwarePHENIX (1.18.1_3865)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]89.0002.690
High resolution limit [Å]2.6402.640
Rmerge0.209
Number of reflections301471419
<I/σ(I)>5
Completeness [%]99.293
Redundancy9.45.3
CC(1/2)0.9930.300
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP29325 % (w/v) PEG 3350, 0.2 M NaCl, 0.1 M Tris pH 8.5

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