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6XUG

Human Ecto-5'-nucleotidase (CD73) in complex with A2410 (compound 53 in publication) in the closed form in crystal form IV

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.1
Synchrotron siteBESSY
Beamline14.1
Temperature [K]100
Detector technologyPIXEL
Collection date2018-01-24
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.91840
Spacegroup nameP 21 21 2
Unit cell lengths93.750, 230.010, 54.270
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution72.670 - 2.090
R-factor0.19
Rwork0.188
R-free0.23700
Structure solution methodFOURIER SYNTHESIS
Starting model (for MR)4h2i
RMSD bond length0.010
RMSD bond angle1.160
Data reduction softwareDIALS
Data scaling softwarexia2
Phasing softwareautoBUSTER
Refinement softwareBUSTER (2.10.3)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]86.81086.8902.120
High resolution limit [Å]2.0905.6702.090
Rmeas0.2810.1000.946
Rpim0.0910.0340.335
Total number of observations6439253218324661
Number of reflections7047938363342
<I/σ(I)>5.311.61.8
Completeness [%]99.710097
Redundancy9.18.47.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP291Reservoir: 9 % PEG 6000, 0.1 M MES pH 5.8. Drop: 1 micro-L crystallization buffer +1 micro-L of 3 mg/mL CD73 in 10 mM Tris pH 8.0, 10 micro-M ZnCl2; 200 micro-M NaH2PO4, 3 % DMSO, compound: saturated solution. Cryo: 20% PEG200 in crystallization drop

222624

PDB entries from 2024-07-17

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