6XKD
Structure of ligand-bound mouse cGAMP hydrolase ENPP1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.1 |
Synchrotron site | ALS |
Beamline | 5.0.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-09-22 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.97741 |
Spacegroup name | P 31 |
Unit cell lengths | 102.350, 102.350, 172.891 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 30.640 - 3.200 |
R-factor | 0.205 |
Rwork | 0.201 |
R-free | 0.27330 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4gtw |
RMSD bond length | 0.009 |
RMSD bond angle | 1.405 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 88.638 | 86.446 | 3.370 |
High resolution limit [Å] | 3.200 | 10.120 | 3.200 |
Rmerge | 0.067 | 0.723 | |
Rmeas | 0.204 | 0.086 | 0.927 |
Rpim | 0.124 | 0.052 | 0.573 |
Total number of observations | 65417 | 2035 | 9061 |
Number of reflections | 30691 | 954 | 4393 |
<I/σ(I)> | 5.4 | 11.1 | 1.8 |
Completeness [%] | 91.8 | 89.6 | 90.6 |
Redundancy | 2.1 | 2.1 | 2.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.5 | 295 | PEG 600, sodium acetate, magnesium acetate, polyvinylpyrrolidone |