6WV3
Human VKOR with warfarin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-10-07 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9791 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 153.161, 70.854, 47.356 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 32.153 - 2.197 |
R-factor | 0.2019 |
Rwork | 0.201 |
R-free | 0.22270 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2b3p |
RMSD bond length | 0.003 |
RMSD bond angle | 0.577 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.240 |
High resolution limit [Å] | 2.197 | 5.970 | 2.200 |
Rmerge | 0.084 | 0.044 | 0.519 |
Rmeas | 0.105 | 0.055 | 0.663 |
Rpim | 0.062 | 0.032 | 0.406 |
Number of reflections | 24909 | 1171 | 1201 |
<I/σ(I)> | 10.2 | ||
Completeness [%] | 92.0 | 78.1 | 90.3 |
Redundancy | 2.4 | 2.6 | 2.2 |
CC(1/2) | 0.994 | 0.708 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | LIPIDIC CUBIC PHASE | 6.5 | 295 | 37% PEG400, 0.1 M MES, pH 6.5 |