6VZI
Crystal Structure of HIV-1 CAP256 RnS-3mut-2G-SOSIP.664 Prefusion Env Trimer in Complex with Human Antibodies 3H109L and 35O22 at 3.5 Angstrom
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-10-13 |
Detector | RAYONIX MX300-HS |
Wavelength(s) | 1 |
Spacegroup name | P 63 |
Unit cell lengths | 133.920, 133.920, 315.110 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 43.836 - 2.716 |
R-factor | 0.2318 |
Rwork | 0.229 |
R-free | 0.27550 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6mtj |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.800 |
High resolution limit [Å] | 2.700 | 5.810 | 2.700 |
Rmerge | 0.128 | 0.066 | 2.067 |
Rmeas | 0.138 | 0.070 | 2.368 |
Rpim | 0.049 | 0.024 | 1.122 |
Total number of observations | 383837 | ||
Number of reflections | 53716 | 8493 | 1231 |
<I/σ(I)> | 5.5 | ||
Completeness [%] | 63.3 | 98.9 | 14.6 |
Redundancy | 7.1 | 8.5 | 3.2 |
CC(1/2) | 0.990 | 0.113 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 298 | 60 mM sodium acetate pH 4.6, 120 mM ammonium sulfate and 6.3% PEG 4,000 |