6VEO
ATAD2B bromodomain in complex with 4-({[(3R,4R)-4-{[3-methyl-5-(5-methylpyridin-3-yl)-2-oxo-1,2-dihydro-1,7-naphthyridin-8-yl]amino}piperidin-3-yl]oxy}methyl)-1lambda~6~-thiane-1,1-dione (compound 38)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SEALED TUBE |
Source details | BRUKER D8 QUEST |
Temperature [K] | 100 |
Detector technology | CMOS |
Collection date | 2018-03-20 |
Detector | BRUKER PHOTON 100 |
Wavelength(s) | 1.5418 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 76.358, 76.358, 102.312 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 20.240 - 2.400 |
R-factor | 0.1965 |
Rwork | 0.194 |
R-free | 0.25140 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3lxj |
RMSD bond length | 0.005 |
RMSD bond angle | 0.546 |
Data reduction software | PROTEUM |
Data scaling software | PROTEUM |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1-3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.240 | 2.427 |
High resolution limit [Å] | 2.400 | 2.400 |
Rmerge | 0.020 | 0.654 |
Number of reflections | 13029 | 597 |
<I/σ(I)> | 21.51 | |
Completeness [%] | 99.6 | |
Redundancy | 2 | |
CC(1/2) | 1.000 | 0.021 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 277 | 25% PEG3350, 0.25 M ammonium sulfate, 0.1 M Bis-Tris, pH 5.5 |