6V16
Crystal structure of the bromodomain of human BRD7 bound to TP472
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | Cu FINE FOCUS |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-02-15 |
Detector | RIGAKU SATURN 944 |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 47.084, 33.497, 76.561 |
Unit cell angles | 90.00, 98.45, 90.00 |
Refinement procedure
Resolution | 46.573 - 1.900 |
R-factor | 0.1895 |
Rwork | 0.188 |
R-free | 0.22150 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6ppa |
Data reduction software | DIALS |
Data scaling software | Aimless (0.5.1) |
Phasing software | PHASER |
Refinement software | PHENIX (1.14-3260_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.573 | 46.570 | 1.940 |
High resolution limit [Å] | 1.900 | 9.110 | 1.900 |
Rmerge | 0.078 | 0.098 | 0.169 |
Rmeas | 0.092 | 0.118 | 0.199 |
Rpim | 0.048 | 0.064 | 0.104 |
Total number of observations | 583 | 4106 | |
Number of reflections | 18696 | 196 | 1183 |
<I/σ(I)> | 8.8 | 13.4 | 3.7 |
Completeness [%] | 98.2 | 99.1 | 95.7 |
Redundancy | 3.6 | 3 | 3.5 |
CC(1/2) | 0.991 | 0.942 | 0.953 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 0.1 M (NH4)2SO4, 0.05 M Bis-tris (pH 6.5), and 30 % Pentaerythritol ethoxylate |