6V0Q
Crystal structure of the bromodomain of human BRD7 bound to TG003
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-04-10 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 59.970, 36.780, 118.960 |
Unit cell angles | 90.00, 101.77, 90.00 |
Refinement procedure
Resolution | 37.680 - 1.690 |
R-factor | 0.1822 |
Rwork | 0.181 |
R-free | 0.21790 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6ppa |
RMSD bond length | 0.007 |
RMSD bond angle | 0.849 |
Data reduction software | XDS |
Data scaling software | XSCALE (20180409) |
Phasing software | PHASER |
Refinement software | PHENIX (1.12) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 37.680 | 37.680 | 1.730 |
High resolution limit [Å] | 1.690 | 7.560 | 1.690 |
Rmerge | 0.058 | 0.043 | 0.297 |
Rmeas | 0.063 | 0.047 | 0.321 |
Number of reflections | 56788 | 675 | 4192 |
<I/σ(I)> | 19.77 | 32.65 | 6.79 |
Completeness [%] | 98.5 | 94.1 | 99.3 |
Redundancy | 6.728 | 5.947 | 6.948 |
CC(1/2) | 0.998 | 0.997 | 0.969 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 0.1 M (NH4)2SO4, 0.05 M Bis-tris (pH 6.5), and 30 % Pentaerythritol ethoxylate |