6UPX
RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.2.2 |
Synchrotron site | ALS |
Beamline | 8.2.2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-09-14 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.00003 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 168.988, 223.314, 193.102 |
Unit cell angles | 90.00, 101.03, 90.00 |
Refinement procedure
Resolution | 49.295 - 3.400 |
R-factor | 0.2206 |
Rwork | 0.220 |
R-free | 0.26620 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2e2j |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.2) |
Phasing software | PHASER (2.8.1) |
Refinement software | PHENIX (1.13) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.300 | 3.360 |
High resolution limit [Å] | 3.300 | 3.300 |
Rmerge | 0.428 | 3.818 |
Rmeas | 0.459 | 4.092 |
Rpim | 0.165 | 1.468 |
Total number of observations | 811001 | 40721 |
Number of reflections | 105382 | 5266 |
<I/σ(I)> | 6.7 | 0.6 |
Completeness [%] | 100.0 | 100 |
Redundancy | 7.7 | 7.7 |
CC(1/2) | 0.984 | 0.245 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 298 | 390mM (NH4)2HPO4/NaH2PO4, pH 6.5, 5mM dioxane, 5mM DTT, 10-12% PEG6000 |