6U01
Dihydrodipicolinate synthase (DHDPS) from C.jejuni, N84D mutant with pyruvate bound in the active site
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08B1-1 |
Synchrotron site | CLSI |
Beamline | 08B1-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-05-30 |
Detector | RAYONIX MX300HE |
Wavelength(s) | 0.9795 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 84.990, 231.420, 200.650 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.436 - 1.870 |
R-factor | 0.191 |
Rwork | 0.189 |
R-free | 0.22130 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4ly8 |
RMSD bond length | 0.004 |
RMSD bond angle | 0.798 |
Data scaling software | XSCALE (3.25) |
Phasing software | PHENIX |
Refinement software | PHENIX (dev_2398) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 43.436 | 43.436 | 1.920 |
High resolution limit [Å] | 1.870 | 8.360 | 1.870 |
Rmerge | 0.094 | 0.055 | 0.567 |
Rmeas | 0.112 | 0.066 | 0.670 |
Total number of observations | 554299 | ||
Number of reflections | 161269 | 1899 | 11909 |
<I/σ(I)> | 7.85 | 15.57 | 2.06 |
Completeness [%] | 99.2 | 95.2 | 99.9 |
Redundancy | 3.437 | 3.215 | 3.505 |
CC(1/2) | 0.992 | 0.993 | 0.742 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 7.4 | 288.15 | 0.7 M Magnesium acetate, 10 % PEG8000 0.1 M Sodium acetate (pH 7.4) |