6T5J
Structure of NUDT15 in complex with inhibitor TH1760
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-07-23 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.918 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 46.790, 46.809, 137.596 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 44.310 - 1.600 |
R-factor | 0.1629 |
Rwork | 0.161 |
R-free | 0.19460 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5lpg |
RMSD bond length | 0.007 |
RMSD bond angle | 0.788 |
Data reduction software | iMOSFLM |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.810 | 46.810 | 1.630 |
High resolution limit [Å] | 1.600 | 8.760 | 1.600 |
Rmerge | 0.131 | 0.068 | 0.550 |
Rmeas | 0.143 | 0.074 | 0.597 |
Rpim | 0.056 | 0.027 | 0.231 |
Number of reflections | 40092 | 305 | 1913 |
<I/σ(I)> | 11.3 | 22.7 | 4.2 |
Completeness [%] | 98.6 | 97.6 | |
Redundancy | 11.9 | 12.4 | |
CC(1/2) | 0.996 | 0.998 | 0.843 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 290 | 0.1 M Tris-HCl pH 8.5, 0.15 M MgCl2, and 30% PEG3350 |