6T22
N-terminal domain of EcoKMcrA restriction endonuclease (NEco) in complex with T5hmCGA target sequence
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-08-14 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9195 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 113.417, 113.417, 156.367 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 33.540 - 2.210 |
R-factor | 0.1592 |
Rwork | 0.157 |
R-free | 0.20340 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6ghc |
RMSD bond length | 0.005 |
RMSD bond angle | 1.210 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0253) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 33.540 | 2.340 |
High resolution limit [Å] | 2.210 | 2.210 |
Rmerge | 0.084 | 1.761 |
Rmeas | 0.086 | 1.802 |
Number of reflections | 30298 | 4597 |
<I/σ(I)> | 38.15 | 1.91 |
Completeness [%] | 99.2 | 95.4 |
Redundancy | 35.8 | 20.8 |
CC(1/2) | 1.000 | 0.734 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 291 | 1.8 ul of protein-DNA solution (436:523 uM) was mixed with 2.2 ul of the F1 condition of the PACT premier crystal screen (MDL) (0.2 M Sodium fluoride, 0.1 M Bis-Tris propane, pH 6.5, 20% PEG 3350) and cryo-protected with an addition of 25% glycerol. |