6SQJ
Crystal structure of glycoprotein D of Equine Herpesvirus Type 1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, DESY BEAMLINE P11 |
Synchrotron site | PETRA III, DESY |
Beamline | P11 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-10-26 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.0332 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 71.860, 94.464, 101.296 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.803 - 2.245 |
R-factor | 0.206 |
Rwork | 0.203 |
R-free | 0.25740 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2c36 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.380 |
High resolution limit [Å] | 2.240 | 2.240 |
Number of reflections | 33402 | 5140 |
<I/σ(I)> | 11.71 | |
Completeness [%] | 99.1 | |
Redundancy | 6.5 | |
CC(1/2) | 0.998 | 0.586 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 291.15 | 0.1 M Tris buffer, 0.2 M magnesium chloride, 30% (w/v) PEG 4000 |