6SQJ
Crystal structure of glycoprotein D of Equine Herpesvirus Type 1
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B | Glycoprotein D | polymer | 332 | 37991.0 | 2 | UniProt (G9HV37) Pfam (PF01537) UniProt (by SIFTS) (Q04245) In PDB | Equid alphaherpesvirus 1 (Equine herpesvirus 1) | |
2 | C, D | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 2 | In PDB GlyTouCan (G42666HT) | |||
3 | A | MAGNESIUM ION | non-polymer | 24.3 | 2 | Chemie (MG) | |||
4 | B | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) | |||
5 | water | water | 18.0 | 132 | Chemie (HOH) |
Sequence modifications
A, B: 31 - 349 (UniProt: G9HV37)
PDB | External Database | Details |
---|---|---|
Glu 350 | - | expression tag |
Asn 351 | - | expression tag |
Leu 352 | - | expression tag |
Tyr 353 | - | expression tag |
Phe 354 | - | expression tag |
Gln 355 | - | expression tag |
Gly 356 | - | expression tag |
His 357 | - | expression tag |
His 358 | - | expression tag |
His 359 | - | expression tag |
His 360 | - | expression tag |
His 361 | - | expression tag |
His 362 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 75982.0 | |
Branched | Number of molecules | 2 |
Total formula weight | 848.8 | |
Non-Polymers* | Number of molecules | 3 |
Total formula weight | 269.8 | |
All* | Total formula weight | 77100.6 |