6SQJ

Crystal structure of glycoprotein D of Equine Herpesvirus Type 1

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, B (A, B)	Glycoprotein D	polymer	332	37991.0	2	UniProt (G9HV37) Pfam (PF01537) UniProt (by SIFTS) (Q04245)	Equid alphaherpesvirus 1 (Equine herpesvirus 1)
2	C, D (C, D)	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		424.4	2	In PDB GlyTouCan (G42666HT)
3	E, F (A)	MAGNESIUM ION	non-polymer		24.3	2	Chemie (MG)
4	G (B)	2-acetamido-2-deoxy-beta-D-glucopyranose	non-polymer		221.2	1	Chemie (NAG)
5	H, I (A, B)	water	water		18.0	132	Chemie (HOH)

Sequence modifications

A, B: 31 - 349 (UniProt: G9HV37)

PDB	External Database	Details
Glu 350	-	expression tag
Asn 351	-	expression tag
Leu 352	-	expression tag
Tyr 353	-	expression tag
Phe 354	-	expression tag
Gln 355	-	expression tag
Gly 356	-	expression tag
His 357	-	expression tag
His 358	-	expression tag
His 359	-	expression tag
His 360	-	expression tag
His 361	-	expression tag
His 362	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	2
	Total formula weight	75982.0
Branched	Number of molecules	2
	Total formula weight	848.8
Non-Polymers*	Number of molecules	3
	Total formula weight	269.8
All*	Total formula weight	77100.6

*Water molecules are not included.