6SLM
Crystal structure of full-length HPV31 E6 oncoprotein in complex with LXXLL peptide of ubiquitin ligase E6AP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-07-04 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 113.640, 113.640, 185.970 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 49.210 - 2.800 |
R-factor | 0.2319 |
Rwork | 0.230 |
R-free | 0.26820 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4xr8 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.619 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.250 | 2.870 |
High resolution limit [Å] | 2.800 | 2.800 |
Rmeas | 0.230 | 2.076 |
Number of reflections | 18049 | 1295 |
<I/σ(I)> | 14.49 | 1.57 |
Completeness [%] | 99.1 | |
Redundancy | 19.4 | 18.9 |
CC(1/2) | 0.998 | 0.520 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 200mM tri-lithium citrate, 20% PEG 33350 protein concentration: 30mg/ml cryo condition: 35% glycerol |